logo
Infectious Disease Data RepositoryIDDR

Infectious Disease Repository

Timothy L. Wiemken and Jacob A. Clarke

The Infectious Disease Repository provides a location for data and analytical resources for various infectious etiologies. The website is developed and maintained by Jacob Clarke at Quartz Software.

Dashboards

Covid Variants

Plotting COVID variant rates by country.

View Dashboard
Omicron

SARS-CoV-2 Variant and Lineage Investigator.

CovidVax

Geospatial associations between COVID-19 vaccine uptake, hesitancy, demographics, social vulnerability, and case/death rates.

COVID-19 Mortality

Death anomaly detection during the COVID-19 pandemic.

Excess Mortality

Excess mortality visualizations during the COVID19 pandemic.

COVID Toolkit

A toolkit for COVID-19 related data and analysis.

Datasets

COVID by County
tidyiddr::covid_by_county()

US COVID 19 community levels by county as reported by the CDC

DictionaryDownload
Test Burden
tidyiddr::test_burden()

Test burden data from the CDC.

MISC Data
tidyiddr::misc()

Daily data on MISC cases vs COVID cases in the US.

Breakthrough by State
tidyiddr::breakthrough()

Breakthrough data scraped from multiple states daily. Contains information on vaccinated vs unvaccinated hospitalizations and COVID cases.

COVID19 Covariants by State
tidyiddr::covariants()

CoVariants provides an overview of SARS-CoV-2 variants and mutations that are of interest. Here, you can find out what mutations define a variant, what impact they might have (with links to papers and resources), and where variants are found

COVID19 Covariants by Country
tidyiddr::covariants_country()

CoVariants provides an overview of SARS-CoV-2 variants and mutations that are of interest. Here, you can find out what mutations define a variant, what impact they might have (with links to papers and resources), and where variants are found

COVID19 Caserates by Age Group
tidyiddr::caserates_by_age()

Weekly case rates of COVID 19 by age group as reported by the CDC

COVID19 Death Counts by Age Group
tidyiddr::deathcounts_by_age()

This datasets is pulled daily from the CDC's data tracker for easier access. It provides weekly death counts secondary to COVID 19 stratified by age group.

COVID19 Death Rates by Age Group
tidyiddr::deathrates_by_age()

Weekly death rates of COVID 19 by age group as reported by the CDC

COVID19 Hospitalizations by Age Group
tidyiddr::hospitalizations_by_age()

Weekly hospitalizations of COVID 19 by age group as reported by the CDC

R Packages

qcensus

tidyiddr

shiny.mui

shiny.quartz

ggquartz

qaverted

Contribute

If you find any issues with the data or want to contribute, please open an issue on Github.

Authors

This project is led by Timothy L. Wiemken and developed by Jacob Clarke at Quartz Software LLC.

Special thanks to the following contributors:

  • Timothy Wiemken
  • Jacob Clarke
  • Christopher Prener
  • Samson Niemotka
  • Farid Khan
  • John McLaughlin

Copyright © Quartz Software LLC 2022.


Terms of Service Cookies Privacy Disclaimer